PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_1683BEFD0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 907aa    MW: 99800.8 Da    PI: 7.2879
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_1683BEFD0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.39.3e-22120221190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek.dgk 75 
                            +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk             ++    + + +rtgC a+l++k+    + 
  Traes_2AS_1683BEFD0.1 120 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetnatdvtvaASPPPPRCPDSRTGCLASLTIKLLPsANA 206
                            6*****************99997666.****************99996666666655443344448899*************99899* PP

                   FAR1  76 wevtkleleHnHela 90 
                            ++vt+++ eHnH+la
  Traes_2AS_1683BEFD0.1 207 FRVTEFVAEHNHPLA 221
                            *************97 PP

2FAR169.21e-21267366290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkw 76 
                            fYn+YA++vGFsvr+s++k++  +g i++r fvCs+eg +++ k++                 r   + trtgC+a++++k +   ++
  Traes_2AS_1683BEFD0.1 267 FYNRYAEHVGFSVRRSYKKRK--HGVIVSRIFVCSREGVSDRAKHDglasisanagggaPGPPRPGPPPTRTGCQARMVIKITPCRTY 352
                            9*************9976655..9******************99999****999999987778888999******************* PP

                   FAR1  77 evtkleleHnHela 90 
                            +v+k+  eHnH+la
  Traes_2AS_1683BEFD0.1 353 RVAKFIAEHNHPLA 366
                            ************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-19120221IPR004330FAR1 DNA binding domain
PfamPF031011.6E-18267366IPR004330FAR1 DNA binding domain
PfamPF105518.4E-21455548IPR018289MULE transposase domain
PfamPF044347.8E-6723769IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.076723770IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6745772IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MALINPSTTH IYPQPPPPQP IHPTSSSSSG CSPPSFLQTL AQTLMSTTAH PPASLSGDSS  60
PTTSGSSSPS SSAAVAGSEE PALLGQATST STPSAAGDDA AVPSSPQMGM YFETEDDAYE  120
FYKAYAARLG FVVRKSNKSK NSRHTVTRRL FVCSKQGFRQ EPKKPQDETN ATDVTVAASP  180
PPPRCPDSRT GCLASLTIKL LPSANAFRVT EFVAEHNHPL ASAVSAVAMI PSSSSHHTIA  240
AAASLPDPRD GPRPEMHFET EDDAYAFYNR YAEHVGFSVR RSYKKRKHGV IVSRIFVCSR  300
EGVSDRAKHD GLASISANAG GGAPGPPRPG PPPTRTGCQA RMVIKITPCR TYRVAKFIAE  360
HNHPLANSET VHKLRSHKMR ARGHELGPGE LHRRKQGKGV QLGDAGAALE YLEGLQVGNP  420
SLYYAVGMAP DGNLAVNFFW ADAKSIIDFR SFGDVVCFDT TYGLNVYGRP FALFVGVDNH  480
KQLLVLGAAL LYDDGIQSLK WVFQAFDDAM RDRQPKTILI DERSECAIAA AEVWPGSNHC  540
TSVWHIYHSS KRHLKQVFES SKSFGNALSQ CLFDCEDEME FLSAWEKLIE KHDIGESEWL  600
SRLFLEKEKW ALPYRRTVFS ADILSTLRKD SMINELKREL NEQEDILLFF KRYETMLEEH  660
RSKKLQADVD GNQVTLPIPS LRMLKQSSNA YTPEAFKMFQ GEFEAYMNCM SFPCSVVGTV  720
SEYKITLDEK PSDAIVKFDA LDGLATCSCR KFESVGIQCC HVLKVLDLKN IKELPEQYIL  780
KRWRKDARSV RMGEEPNCGS SSIMRSSLDV RFSNMCRMVS LIASRAAKSE EAMSYIESQS  840
SVLLKHLDEI LQTSYPENGN HDVASSSQAI SFVGNHPDHT TQARAVADTA NGLTSLLGIS  900
AYPPVDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563073.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLW5AZR50.0W5AZR5_WHEAT; Uncharacterized protein
STRINGMLOC_2737.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-83FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]